• 《高效合成藏红花酸糖苷的糖基转移酶的跨界挖掘及改造》
  • 作者:丁方宇著
  • 单位:南京工业大学
  • 论文名称 高效合成藏红花酸糖苷的糖基转移酶的跨界挖掘及改造
    作者 丁方宇著
    学科 化学工程与技术
    学位授予单位 南京工业大学
    导师 何冰芳指导
    出版年份 2018
    中文摘要 天然药用植物在人类医药发展史中有着极为重要的意义。作为天然植物中广泛存在一类天然产物,糖苷化合物以其良好的水溶性、较高的生物利用度等优势成为药物开发研究的热点,如红景天苷、人参皂苷等。但是一些重要天然植物资源的稀缺以及植物内庞杂的糖苷化合物种类使得从天然植物中分离获取足量的糖苷单体极为困难,限制了糖苷类天然产物的开发。近年来,随着生物信息学和生物技术的飞速发展,酶法/合成生物学方法在重要糖苷化合物的生物合成上展现出了巨大的优势。藏红花酸糖苷作为天然药用植物藏红花的主要有效成分,具有抗癌、抗氧化等多种功效。但是其生物合成仍受限于缺乏高效的藏红花酸糖基转移酶。本论文针对目前藏红花酸糖苷生物合成存在的缺乏高效糖基转移酶问题,通过对植物来源的藏红花酸糖基转移酶关键功能模序分析,跨界筛选获得了首个微生物来源的藏红花酸糖基转移酶(Bs-GT);通过mRNA二级结构优化、诱导条件优化实现了Bs-GT在大肠杆菌内的高效表达;通过蛋白质分子改造技术,提高了Bs-GT糖基化藏红花酸的活性;并通过构建非水相-双酶偶联催化体系,解决了藏红花酸溶解度低及反应体系内高浓度UDP对糖基转移酶活性抑制等问题。主要的研究成果总结如下: (1)藏红花酸糖基转移酶的跨界挖掘:通过多序列比对、同源建模、分子对接模拟等方法,预测了植物糖基转移酶UGT75L6和Cs-GT2催化藏红花酸糖基化反应的关键功能模序,并首次将N-端模序(N-terminal motif)和PSPG模序(PSPG motif)结合应用于糖基转移酶的跨界筛选,成功筛选并克隆获得7个(Bs-GT、Bc-GTA、Bc-GTB、Bl-GT1、Bl-GT5、Bp-GT1、Fg-GT)可能具有藏红花酸糖基化功能的微生物糖基转移酶;构建了含有上述7个候选糖基转移酶的重组大肠杆菌E.coli-BL21(DE3),实现了其在大肠杆菌内的异源表达;通过静息细胞全细胞转化,鉴定出其中Bs-GT和Bc-GTA具有糖基化藏红花酸的能力,其中Bs-GT相对活性较高,藏红花酸的初步转化率可达35%。这是首次从微生物中发现了藏红花酸糖基转移酶。 (2)糖基转移酶Bs-GT的高效表达及纯化:对糖基转移酶Bs-GT重组质粒5’端mRNA二级结构进行预测与优化,选取了最小生成自由能较高(-7.0kcal/mol),起始密码子ATG位于单链区且,茎环结构相对简单的pET-28a-Bs-GT-Nhe I重组质粒作为糖基转移酶Bs-GT高效异源表达的载体;构建重组大肠杆菌E.coil-BL-21/pET-28a-Bs-GT,并对诱导产酶条件进行了优化,优化后的产酶条件为在宿主菌生长OD₆₀₀≈0.8时添加终浓度为25μmol/L的IPTG和20g/L的乳糖,诱导温度为20℃;在优化后的产酶条件下诱导表达24h后,发酵液中糖基转移酶活力达到197U/L。通过Ni-NTA金属螯合层析技术对糖基转移酶Bs-GT进行了纯化,纯化后的Bs-GT蛋白比活为2.26U/㎎。 (3)糖基转移酶Bs-GT的酶学性质及底物谱表征:糖基转移酶Bs-GT的最适温度为30℃,但在25℃以下具有较好的稳定性;Bs-GT的最适pH为9.5,并在碱性范围内(pH8.0-10.0)具有较好的稳定性;Bs-GT的糖基化活性不依赖于金属离子的存在,属于典型的GT-B类型的糖基转移酶;Ca²⁺、Md²⁺、Mn²⁺、Fe³⁺等离子对Bs-GT有微弱的激活作用,Ag⁺、Zn²⁺会显著地抑制Bs-GT的活性;Bs-GT具有较好的有机溶剂具有耐受性,在10%的DMSO、DMF等亲水性有机溶剂存在条件下,放置4h后仍能维持90%以上的活性。表征了Bs-GT的底物谱,除了藏红花酸之外,Bs-GT对于一些黄酮类天然化合物如槲皮素、山奈酚、白藜芦醇等也展现出较强的糖基化能力。当以UDPG作为糖基供体进行对藏红花酸进行糖基化时,经2h反应后,0.02mmol/L的藏红花酸可以被糖基化生成藏红花酸糖苷-5和藏红花酸糖苷-3,其综合转化率约为80%。 (4)糖基转移酶Bs-GT的分子改造:构建了糖基转移酶Bs-GT的三维结构模型,通过藏红花酸底物对接模拟预测与藏红花酸结合相关的氨基酸,并通过丙氨酸扫描确认His17、Asp328、Gln329为藏红花酸糖基化活性的催化“三联体氨基酸”,并鉴定了与Bs-GT活性相关度较高的热点氨基酸Thr11和Phe242;对Thr11进行饱和突变,并从突变体库中筛选获得活性提高最多的突变体T11G;进而基于T11G对F242进行饱和突变,筛选获得活性提高1.4倍的突变体T11G-F242Y:对Bs-GT-T11G-F242Y突变体进行了纯化,并研究了突变体的酶学性质。与野生型相比,突变体的温度特性、pH特性没及有机溶剂耐受性没有明显的改变,但对于藏红花酸的K〓值显著降低;通过对Bs-GT进行模拟突变及对接分析,推测该突变体主要是通过增强对藏红花酸的亲和力,从而提高突变体对于藏红花酸的催化活性。相比于野生型Bs-GT,T11G-F242Y突变体的藏红花酸糖基化活性提高了1.41倍,其12h转化率由野生型的81%提升到了89%。 (5)藏红花酸糖基化非水相-双酶偶联体系构建:通过添加DMSO构建非水相催化体系,并对DMSO浓度进行优化;10%DMSO的加入不仅提高了藏红花酸的溶解度,还显著提高了糖基化产物中藏红花酸糖苷-5的比例,有利于对糖基化产物进行选择性调控。通过引入来源于拟南芥(Arabidopsis thaliana)的蔗糖合成酶At-Susy,实现了UDPG的循环再生,并与糖基转移酶Bs-GT偶联构建双酶偶联体系催化藏红花酸糖基化。优化后的双酶偶联反应体系的条件为在pH8.0的Gly-NaOH缓冲中添加比例为1.5:1的糖基转移酶Bs-GT和蔗糖合成酶At-SS,1mmol/L的UDP,以及300mmol/L的蔗糖。蔗糖合成酶At-SS与糖基转移酶Bs-GT偶联催化体系的引入,不仅解决了高浓度UDP对糖基转移酶Bs-GT活性抑制的问题,而廉价的蔗糖与微量的UDP替代昂贵的UDPG还显著的降低了藏红花酸糖苷酶法合成的成本。通过综合利用非水相催化与蔗糖合成酶-糖基转移酶偶联催化技术,实现了对糖基化产物的选择性调控,降低了藏红花酸糖基化成本并提高了藏红花酸糖苷的产量。经分批添加藏红花酸,最终在2%和10%的DMSO-缓冲体系分别合成了4.88mmol/L的藏红花酸糖苷-3和4.98mmol/L藏红花酸糖苷-5。 关键词:藏红花酸 藏红花酸糖苷 糖基转移酶 N-端底物结合模序 植物次生产物糖基转移酶模序 跨界挖掘 高效表达 蛋白质工程 非水相-双酶偶联催化
    英文摘要 Natural medical plants have historically proven their importance in human medicine history, and now still represent an important pool for identifying and isolating bioactive natural products for novel drug discovery. Glycosides, one of the major groups of natural products, have gained much interest for their high solubility and various bioactivities, such as salidroside and ginsenosides. But the rarity of many valuable natural plants and the complexity of various glycosides in natural plants make it difficult to isolate enough glycoside monomer. With the last development of bioinformatics and biotechnology, enzymatic transformation and synthetic biology have shown great advantage in the biosynthesis of many important natural products. Glycosylation is the final step of the biosynthesis of many glycosides, which is mainly catalized by various glycosyltransferases. Thus, it is very important to screen glycosyltransferases for the biosynthesis of natural glycosides. Crocins are the major active ingredients of natural medical plant Crocus sativus, which is famous for its anti-tumor, antioxidation, and cardiovascular protection properties. But the biosynthesis of crocins was restricted by the lack of efficient crocetin glycosyltransferases. In this study, to provide efficient crocetin glycosyltransferase for crocins synthesis, we mined a microbe-derived crocetin glycosyltransferase (Bs-GT) based on the combined analysis of N-terminal and PSPG motif of plant-derived crocetin glycosyltransferases. Through optimization of mRNA secondary structure and inducing conditions, Bs-GT was efficiently expressed in engineered E.coli. Bs-GT protein was purified by Ni-NTA affinity chromatography and its enzymatic property was characterized. The glycosylation activity of Bs-GT was further improved by protein engineering. Non-aqueous two-enzyme coupled reaction system was established to improve the solubility of substrate crocetin and reduce the inhibition effect of high concentration of UDP, and efficient enzymatic synthesis of crocins was achieved in this reaction system. (1)Mining of crocetin glycosyltransferase across plant-microbial kingdom: The key motifs involved in the binding of crocetin to plant-derived crocetin glycosyltransferases UGT75L6 and Cs-GT2 were predicted by multiple sequence alignment, homologous modeling and in slico docking analysis. The combined analysis of N-terminal and PSPG motif was applied to screen crocetin glycosyltransferases, and seven candidates (Bs-GT, Bc-GT A, Bc-GTB, Bl-GT1, Bl-GT5, Bp-GT1, Fg-GT) were mined. The seven glycosyltransferases were cloned and expressed in E.coli-BL21(DE3). Whole-cell transformation system was established and two glycosyltransferases (Bs-GT and Bc-GTA) were confirmed to be capable of glycosylating crocetin to crocins. Compared to 5c-GTA, Bs-GT showed higher glycosylation activity towards crocetin, with a conversion rate of 35%. Bs-GT and 5c-GTA were the first microbial glycosyltransferases that could glycosylate crocetin to crocins. (2)Efficient expression and purification of 5s-GT: The 5’ mRNA secondary structure of various Bs-GT recombinant plasmids was predicted by RNA Structure online service. Since the recombinant plasmid pET-28a-5s-GT-Nhe I had higher △G (-3.2kcal/mol) and no complex stem-loop structure, plus the initiation codon ATG was located in the single chain, pET-28a-5s-GT-Nhe I was chosed for efficient expression of Bs-GT in E.coli. The recombinant E.coli- pET-28a-5s-GT-Nhe I was constructed and the inducing conditions were optimized. The best inducer was 25μmol/L IPTG, and the best inducer adding time was when OD₆₀₀ reached 0.8. After induced at 20 ℃ for 24h, the maximum glycosylation activity of Bs-GT reached 197U/L. Bs-GT was then purified by Ni-NTA affinity chromatography and the glycosylation activity of Bs-GT towards crocetin was determined to be 2.26U/㎎. (3)Enzymatic characterization and substrate specificity determination of 5s-GT: The optimized temperature of 5s-GT was determined as 30℃, and 5s-GT remained stable under 25 ℃. The optimized pH was determined as 9.5, and remained high activity at alkali conditions (pH8.0-10.0). 5s-GT is a typical GT-B fold glycosyltransferase and its glycosylation activity is independent on metal ions. Ca²⁺, Mg²⁺, Mn²⁺, Fe³⁺ activated 5s-GT slightly, and Ag⁺, Zn²⁺ would inhibit the glycosylation activity of Bs-GT.Bs-GT showed good tolerance to organic solvents, and remained more than 90% initial activity when incubated with 10% (v/v) of DMSO or DMF for 4h. The substrate specificity determination indicated that Bs-GT also showed high glycosylation activity of some flavonoids like quercetin, kaempferol, and resveratrol. When catalyzed by Bs-GT, with UDPG as sugar donor, about 80% of crocetin (0.02mmol/L) could be glycosylated to crocin-5 and crocin-3 after 2h. (4)Protein engineering of Bs-GT. Homology model of Bs-GT was constructed and its active pocket was predicted. Through in slico docking analysis and alanine scanning, Hisl7, Asp328, and Gln329 were determined to be crucial for glycosylation activity, and Thr11A and Phe242A were determined to be beneficial for crocetin glycosylation Saturated mutation at Thr11 was then carried out. Results indicated that T11G mutation showed the highest glycosylation activity of Bs-GT towards crocetin Then further saturated mutation at Phe242 based on T11G was caonducted, and the most effective mutant T11G-F242Y was obtained. The enzymatic proterity of T11G-F242Y was characterized. Compared to wild-type 5s-GT, T11G mutation had little effects on the temperature and pH preference. But the K〓 towards crocetin was decresed. In slico T11G mutation simulation and docking analysis showed a decrease in binding energy of crocetin onto T11G-F242Y than wild Bs-GT. Compared to wild Bs-GT, T11G-F242Y mutant showed a 1.41-fold higher glycosylation activity towards crocetin, and the total glycosylation rate was increased from 81 % to 89%. (5)The construction of non-aqueous two-enzyme coupled glycosylation system: The non-aqueous system was established through adding DMSO into the reaction buffer system. Bs-GT showed high activity and stability in 10% DMSO-buffer system Adding DMSO into the reation system not only increased the solubility of crocetin dramatically, but also increased the substrates selectivity of Bs-GT, which would benefit to the regulation of crocetin glycosylation products. By adding sucrose synthetase(At-ss from Arabidopsis thaliana) into the glycosylation system, the Bs-GT and At-SS coupled reaction system for crocetin glycosylation was established. The reaction condition was further optimized. The reaction system showed highest glycosylation activity under pH8.0 Gly-NaOH buffer, with 1mmol/L UDP and 300mmol/L sucrose. The optimized adding ratio of 5s-GT and At-SS was determined as 1.5:1. The construction of Bs-GT and At-SS coupled reaction system not only dramatically reduced the inhibition effect of high concentration of UDP, but also reduced the cost significantly as only sliht amount of UDP is needed. The non-aqueous catalysis and glycosyltransferase-sucrose synthetase coupled catalysis system great potential for biosynthesis of crocins due to its higher selectivity and tower cost. And through fed-batch reaction, a maxmium yield of 4.88mmol/L crocin-3 and crocin-5 was achieved. Key words: Crocetin; Crocins; Glycosyltransferase; N-terminal motif; PSPG motif; Mining across kingdoms; efficient expression; protein engineering; Non-aqueous two--enzyme coupled system.
    鸥维数据云查询平台
      联系我们
    • 电话:400-139-8015
    • 微信:vbeiyou
    • 邮箱:ovo@qudong.com
    • 总部:北京市海淀区学院路30号科群大厦西楼5层
    Copyright © 西北大学西部大数据研究院旗下“鸥维数据” 京ICP备17065155号-6